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Load demo data as input
Detail
INPUT DATA
Upload GWAS SNP
P
-value file
(required)
P
-value -> -log
10
(
P
-value)
Specify the most significant SNPs
Specify SNPs by
P
-value
Upload SNPs
Input SNPs
X10
-
User SNP file upload
PARAMETERS
Options for searching LD neighborhoods
HapMap population
CEU: European American(CEPH)
ASW: African ancestry in Southwest USA
CHB: Han Chinese in Beijing, China
CHD: Chinese in Metropolitan Denver, Colorado
GIH: Gujarati Indians in Houston, Texas
JPT: Japanese in Tokyo, Japan
LWK: Luhya in Webuye, Kenya
MEX: Mexican ancestry in Los Angeles, California
MKK: Maasai in Kinyawa, Kenya
TSI: Toscans in Italy
YRI: Yoruba in Ibadan, Nigeria (West Africa)
Cutoff
r
2
D'
Distance(up to 200kb)
kb
Options for pathway-based analysis (PBA)
Rule of mapping SNPs to genes
functional SNP
within gene
5kb upstream and downstream of gene
20kb upstream and downstream of gene
100kb upstream and downstream of gene
500kb upstream and downstream of gene
Pathway/gene set databases
KEGG
GO biological process
OR upload your pathways/gene sets
BioCarta
GO molecular function
Number of genes in each pathway/gene set:
Minimum
Maximum
FDR cutoff for PBA:
Email:
Note
: When the job is running, there will be a web link at the bottom of the running page for bookmarking the result page. You can also use the email function.
Job Name:
JSP Page
